corrDNA1.0.1 package

Finding Associations in Position-Wise Aligned DNA Sequence Dataset

assoc_comb

Complete association matrix.

assoc_Zi.Zj

Association between variable ZiZ_{i} and ZjZ_{j}.

assoc_Zi.ZjR

Association between variable ZiZ_{i} and ZjRZ_{jR}.

assoc_Zi.ZjY

Association between variable ZiZ_{i} and ZjYZ_{jY}.

assoc_ZiR.ZjR

Association between variable ZiRZ_{iR} and ZjRZ_{jR}.

assoc_ZiR.ZjY

Association between variable ZiRZ_{iR} and ZjYZ_{jY}.

assoc_ZiY.ZjY

Association between variable ZiYZ_{iY} and ZjYZ_{jY}.

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Can be useful for finding associations among different positions in a position-wise aligned sequence dataset. The approach adopted for finding associations among positions is based on the latent multivariate normal distribution.

  • Maintainer: Prabina Kumar Meher
  • License: GPL (>= 2)
  • Last published: 2018-04-05