# Write structure factors to a reflections file This function writes standardised structure factors data into an ASCII file. The files includes cell size, space group character symbol and Miller indices vector. It can include all of some of observed and/or calculated structure factors amplitudes and phases, either for anomalous or non-anomalous data. ```r write_h(filename, fdata) ``` ## Arguments - `filename`: A character string. Prefix of the structure factors file name. The file name has the form "[prefix]_h.dat". - `fdata`: A names list, usually created with functions `standardise_fdata` or `read_h`, and consisting of the following fields: * a Real numeric. Unit cell length in angstroms. Always included. * SG. Spacegroup 2-letters character string. There are only two symmetries possible when working within 1D crystallography, P1 (no symmetry) and P-1 (inversion through the origin). SG can be either "P1" or "P-1". Always included. * hidx. Real numeric array. 1D unique (positive in the 1D context) Miller indices. Always included. * Fobs. Real numeric array. Amplitudes of observed structure factors. Not always included. * sigFobs. Real numeric array. Errors associated with Fobs. Not always included. * Fp. Real numeric vector. Amplitudes of the positive component of Friedel (or Bijvoet) pairs (F+). Not always included. * sigFp. Real numeric vector. Errors associated with Fp. Not always included. * Fm. Real numeric vector. Amplitudes of the negative component of Friedel (or Bijvoet) pairs (F-). Not always included. * sigFm. Real numeric vector. Errors associated with Fm. Not always included. * Phiobs. Real numeric array. Phases (in degrees) of structure factors obtained with one of the methods used for structure solution. Not always included. * Phicalc. Real numeric array. Phases (in degrees) of structure factors calculated from the correct 1D structure. They are normally used to check correctness of Phiobs. Not always included. ## Returns This function does not return anything, but will create an ASCII file of name *_h.dat which contains structure factors and other type of information. ## Examples ```r # Data from thiocyanate structure datadir <- system.file("extdata",package="crone") filename <- file.path(datadir,"thiocyanate_x.dat") sdata <- read_x(filename) # Miller indices hidx <- 1:10 # Observed structure factors with errors ltmp <- sfobs(hidx,sdata) Fobs <- ltmp$F sigFobs <- ltmp$sF # Phases from calculated structure factors ftmp <- strufac(hidx,sdata) phicalc <- ftmp$Fpha # Create standardised fdata structure fdata <- standardise_fdata(sdata$a,sdata$SG,hidx,Fobs=Fobs, sigFobs=sigFobs,Phicalc=phicalc) # Name of structure factors file (in temporary directory) wd <- tempdir() fname <- file.path(wd,"test") # Write data to file write_h(fname,fdata) ```

write_h function