ctxR1.0.0 package

Utilities for Interacting with the 'CTX' APIs

get_bioactivity_summary_batch

Retrieve bioactivity summary data from AEID batch

get_bioactivity_summary

Retrieve bioactivity summary for AEID

get_cancer_hazard_batch_old

Get cancer hazard batch

get_cancer_hazard_batch

Get cancer hazard batch

get_cancer_hazard

Get cancer hazard

get_chem_info_batch_old

Retrieve chemical information in batch search

get_chemical_mrv

Get mrv file by DTXSID or DTXCID

get_chemical_synonym_batch

Get chemical synonym batch

get_chemical_synonym

Get chemical synonym

get_chemicals_in_list_batch

Get chemicals in a given chemical list batch

get_chemicals_in_list

Get chemicals in a given chemical list

get_ecotox_hazard_by_dtxsid_batch_old

Get ecotox hazard data by DTXSID batch

get_ecotox_hazard_by_dtxsid_batch

Get ecotox hazard data by DTXSID batch

get_ecotox_hazard_by_dtxsid

Get ecotox hazard data by DTXSID

get_exposure_endpoint_status

Exposure API Endpoint status

get_exposure_functional_use_batch

Retrieve exposure related functional use data batch

get_exposure_functional_use_category

Retrieve functional use categories

get_fate_by_dtxsid_batch

Retrieve chemical fate data in batch search

get_fate_by_dtxsid

Get fate by DTXSID

get_genetox_details_batch_old

Get genetox details batch

get_genetox_details_batch

Get genetox details batch

get_genetox_details

Get genetox details

get_genetox_summary_batch_old

Get genetox summary batch

get_genetox_summary_batch

Get genetox summary batch

get_genetox_summary

Get genetox summary

get_hazard_by_dtxsid_batch_old

Get hazard data by DTXSID batch

get_hazard_by_dtxsid_batch

Get hazard data by DTXSID batch

get_hazard_by_dtxsid

Get hazard data by DTXSID

get_hazard_endpoint_status

Hazard API Endpoint status

get_human_hazard_by_dtxsid_batch_old

Get human hazard data by DTXSID batch

get_human_hazard_by_dtxsid_batch

Get human hazard data by DTXSID batch

get_human_hazard_by_dtxsid

Get human hazard data by DTXSID

get_inchi

Get InChI

get_inchikey

Get InChIKey

get_lists_containing_chemical_batch

Get chemical lists containing given chemical batch

get_lists_containing_chemical

Get chemical lists containing given chemical

get_msready_by_dtxcid_batch

Get msready by DTXCID batch search

get_msready_by_dtxcid

Get msready by DTXCID

get_msready_by_formula_batch

Get msready by formula batch search

get_msready_by_formula

Get msready by formula

get_msready_by_mass_batch

Get ms ready by mass batch search

get_msready_by_mass_with_error_batch

Get msready by mass and error offset

get_msready_by_mass

Get msready by mass

chemical_starts_with_batch

Chemical starts with batch search

chemical_starts_with

Chemical starts with

create_data.table_chemical_details

Create chemical details data.table helper function

get_fate_by_dtxsid_batch_old

Retrieve chemical fate data in batch search

chemical_contains_batch

Chemical contains batch search

chemical_contains

Chemical contains

chemical_equal_batch

Chemical equal batch search

chemical_equal

Chemical equal

ctxR_options

ctxR Options

get_all_assays

Retrieve all assays

get_all_public_chemical_lists

Get all public chemical lists

get_annotation_by_aeid_batch

Retrieve annotations for AEID batch

get_annotation_by_aeid

Retrieve annotations for AEID

get_bioactivity_details_batch

Retrieve bioactivity data from DTXSID or AEID batch

get_bioactivity_details

Retrieve bioactivity data from DTXSID, AEID, SPID, or m4id

get_bioactivity_endpoint_status

Bioactivity API Endpoint status

get_chem_info_batch

Retrieve chemical information in batch search

get_chem_info

Retrieve chemical information

get_chemical_by_property_range_batch

Retrieve chemicals by property and value range in batch search

get_chemical_by_property_range

Get chemicals by property and its value range

get_chemical_details_batch

Retrieve chemical details from DTXSID of DTXCID in batch search

get_chemical_details

Retrieve chemical details from DTXSID of DTXCID

get_chemical_endpoint_status

Chemical API Endpoint status

get_chemical_image_batch

Get image file by DTXSID or DTXCID batch

get_chemical_image

Get image file by DTXSID or DTXCID

get_chemical_lists_by_type_batch

Get chemical lists by type batch search

get_chemical_lists_by_type

Get chemical lists by type

get_chemical_mol_batch

Get mol file by DTXSID or DTXCID batch

get_chemical_mol

Get mol file by DTXSID or DTXCID

get_chemical_mrv_batch

Ger mrv file by DTXSID or DTXCID batch

get_exposure_functional_use_probability_batch

Retrieve exposure functional use probability data batch

get_exposure_functional_use_probability

Retrieve probability of exposure for functional use category

get_exposure_functional_use

Retrieve exposure related functional use data

get_exposure_list_presence_tags_by_dtxsid_batch

Retrieve document data and list presence tags for chemicals batch

get_exposure_list_presence_tags_by_dtxsid

Retrieve document data and list presence tags for a chemical

get_exposure_list_presence_tags

Retrieve list presence tags

get_exposure_product_data_batch

Retrieve product data for exposure purposes batch

get_exposure_product_data_puc

Retrieve product use categories related to exposure

get_exposure_product_data

Retrieve product data for exposure purposes

get_public_chemical_list_by_name_batch

Get chemical list by name batch

get_public_chemical_list_by_name

Get chemical list by name

get_skin_eye_hazard_batch_old

Get skin and eye hazard batch

get_skin_eye_hazard_batch

Get skin and eye hazard batch

get_skin_eye_hazard

Get skin and eye hazard

get_smiles

Get Smiles

prepare_word

Prepare url helper function

register_ctx_api_key

Register CTX API Key for ctxR

Access chemical, hazard, bioactivity, and exposure data from the Computational Toxicology and Exposure ('CTX') APIs <https://api-ccte.epa.gov/docs/>. 'ctxR' was developed to streamline the process of accessing the information available through the 'CTX' APIs without requiring prior knowledge of how to use APIs. Most data is also available on the CompTox Chemical Dashboard ('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the EPA Computational Toxicology and Exposure Online Resources <https://www.epa.gov/comptox-tools>.

  • Maintainer: Paul Kruse
  • License: GPL (>= 3)
  • Last published: 2024-07-04