dbGaPCheckup1.1.0 package

dbGaP Checkup

add_missing_fields

Add Missing Fields

check_report

Check Report

complete_check

Complete Check

create_awareness_report

Create Awareness Report

create_report

Create Report

dat_function

Data Utility Function

dat_function_selected

Data Selected Utility Function

dbGaPCheckup-package

dbGaPCheckup: dbGaP Checkup

DD.dict.A

DD.dict.A

DD.dict.B

DD.dict.B

DD.dict.C

DD.dict.C

DD.dict.D

DD.dict.D

DD.dict.E

DD.dict.E

DD.dict.F

DD.dict.F

DD.dict.G

DD.dict.G

DD.dict.H

DD.dict.H

DD.dict.I

DD.dict.I

DD.dict.J

DD.dict.J

DD.dict.K

DD.dict.K

DD.dict.L

DD.dict.L

DD.dict.M

DD.dict.M

DD.dict.N

DD.dict.N

DD.dict.Q

DD.dict.Q

DD.dict.R

DD.dict.R

DD.dict.S

DD.dict.S

decimal_check

Decimal Check

description_check

Description Check

dictionary_search

Data Dictionary Search

dimension_check

Dimension Check

DS.data.A

DS.data.A

DS.data.B

DS.data.B

DS.data.C

DS.data.C

DS.data.D

DS.data.D

DS.data.E

DS.data.E

DS.data.F

DS.data.F

DS.data.G

DS.data.G

DS.data.H

DS.data.H

DS.data.I

DS.data.I

DS.data.J

DS.data.J

DS.data.K

DS.data.K

DS.data.L

DS.data.L

DS.data.M

DS.data.M

DS.data.N

DS.data.N

DS.data.O

DS.data.O

DS.data.P

DS.data.P

DS.data.Q

DS.data.Q

DS.data.R

DS.data.R

DS.data.S

DS.data.S

dup_values

Duplicate Values Function

eval_function

Evaluation Utility Function

field_check

Field Check

id_check

ID Check

id_first_data

Relocate SUBJECT_ID to First Column of Data Set

id_first_dict

Relocate SUBJECT_ID to First Column of Data Dictionary

int_check

Integer Check Base Function

integer_check

Integer Check

label_data

Label the data

minmax_check

Mimimum and Maximum Values Check

misc_format_check

Miscellaneous Format Check

missing_value_check

Missing Value Check

missingness_summary

Missingness Summary

mm_precheck

Min Max Required Pre-checks

mv_precheck

Missing Values Required Pre-checks

NA_check

Missing Value (NA) Check

NA_precheck

Min Max Required Pre-checks

name_check

Name Check

name_correct

Name Correction Utility Function

name_precheck

Name Pre-checks

pkg_field_check

Package Required Field Check

reorder_data

Reorder Data Set Utility Function

reorder_dictionary

Reorder Data Dictionary Utility Function

row_check

Row Check

short_field_check

Truncated Field Check

short_precheck

Truncated Pre-check

super_short_precheck

Very Truncated Pre-check

type_check

Type Check

value_meaning_table

Value-Meaning Table

value_missing_table

Values Missing Table Awareness Function

values_check

Values Check

values_precheck

Values Pre-Check

Contains functions that check for formatting of the Subject Phenotype data set and data dictionary as specified by the National Center for Biotechnology Information (NCBI) Database of Genotypes and Phenotypes (dbGaP) <https://www.ncbi.nlm.nih.gov/gap/docs/submissionguide/>.

  • Maintainer: Lacey W. Heinsberg
  • License: GPL-2
  • Last published: 2023-09-27