dbGaP Checkup
Add Missing Fields
Check Report
Complete Check
Create Awareness Report
Create Report
Data Utility Function
Data Selected Utility Function
dbGaPCheckup: dbGaP Checkup
DD.dict.A
DD.dict.B
DD.dict.C
DD.dict.D
DD.dict.E
DD.dict.F
DD.dict.G
DD.dict.H
DD.dict.I
DD.dict.J
DD.dict.K
DD.dict.L
DD.dict.M
DD.dict.N
DD.dict.Q
DD.dict.R
DD.dict.S
Decimal Check
Description Check
Data Dictionary Search
Dimension Check
DS.data.A
DS.data.B
DS.data.C
DS.data.D
DS.data.E
DS.data.F
DS.data.G
DS.data.H
DS.data.I
DS.data.J
DS.data.K
DS.data.L
DS.data.M
DS.data.N
DS.data.O
DS.data.P
DS.data.Q
DS.data.R
DS.data.S
Duplicate Values Function
Evaluation Utility Function
Field Check
ID Check
Relocate SUBJECT_ID to First Column of Data Set
Relocate SUBJECT_ID to First Column of Data Dictionary
Integer Check Base Function
Integer Check
Label the data
Mimimum and Maximum Values Check
Miscellaneous Format Check
Missing Value Check
Missingness Summary
Min Max Required Pre-checks
Missing Values Required Pre-checks
Missing Value (NA) Check
Min Max Required Pre-checks
Name Check
Name Correction Utility Function
Name Pre-checks
Package Required Field Check
Reorder Data Set Utility Function
Reorder Data Dictionary Utility Function
Row Check
Truncated Field Check
Truncated Pre-check
Very Truncated Pre-check
Type Check
Value-Meaning Table
Values Missing Table Awareness Function
Values Check
Values Pre-Check
Contains functions that check for formatting of the Subject Phenotype data set and data dictionary as specified by the National Center for Biotechnology Information (NCBI) Database of Genotypes and Phenotypes (dbGaP) <https://www.ncbi.nlm.nih.gov/gap/docs/submissionguide/>.
Useful links