dbparser2.0.3 package

Drugs Databases Parser

add_drugbank_info

add_drugbank_info Add passed DrugBank db metadata to passed dvobject

articles

Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parse...

attachments

Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element pa...

books

Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser

cett_actions_doc

Carriers/ Enzymes/ Targets/ Transporters Actions parsers

cett_doc

Carriers/ Enzymes/ Targets/ Transporters parsers

cett_ex_identity_doc

Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifi...

cett_go_doc

Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier par...

cett_nodes_options

returns carriers, enzymes,targets and transporters node valid options.

cett_poly_doc

Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers

cett_poly_pfms_doc

Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers

cett_poly_syn_doc

Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers

dbparser

dbparser: A package for reading and parsing DrugBank xml database.

drug_affected_organisms

Drug Affected Organism parser

drug_ahfs_codes

Drug ahfs-codes parser

drug_atc_codes

Drug ATC Codes element parser

drug_calc_prop

Drug Calculated Properties parser

drug_categories

Drug Categories parser

drug_classification

Drug Classification parser

drug_dosages

Drug Dosages parser

drug_ex_identity

Drug External Identifiers parser

drug_exp_prop

Drug Experimental Properties parser

drug_external_links

Drug External Links parser

drug_food_interactions

Drug Groups parser

drug_general_information

Drugs General Information parser

drug_groups

Drug Groups parser

drug_interactions

Drug Interactions parser

drug_intern_brand

Drug International Brands parser

drug_manufacturers

Drug Manufacturers parser

drug_mixtures

Drug Mixtures parser

drug_node_options

returns drug node valid options.

drug_packagers

Drug Packagers parser

drug_patents

Drug Patents parser A property right issued by the United States Paten...

drug_pathway

Drug Pathway parser

drug_pathway_drugs

Drug Pathway Drugs parser

drug_pathway_enzyme

Drug Pathway Enzymes parser

drug_pdb_entries

Drug pdb-entries parser

drug_pharmacology

Drug Pharmacology parser

drug_prices

Drug Prices Parsers

drug_products

Drug Products parser

drug_reactions

Drug Reactions Parsers

drug_reactions_enzymes

Drug Reactions Enzymes Parsers

drug_salts

Drug Salts parser

drug_sequences

Drug Sequences parser

drug_snp_adverse_reactions

Drug SNP Adverse Drug Reactions parser

drug_snp_effects

Drug SNP Effects parser

drug_syn

Drug Synonyms parser

init_dvobject

init_dvobject initialize dvobject

links

Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser

parse_cett_node

Run all CETT related parsers

parse_drug_nodes

Run all drug related parsers

parse_references_node

Drugs/ Carriers/ Enzymes/ Targets/ Transporters references element par...

parseDrugBank

parseDrugBank

read_drugbank_xml_db

Reads DrugBank xml database and load it into memory.

references_node_options

returns references node valid options.

show_dvobject_metadata

init_dvobject Returns data.frame with two columns (key, value) of dvob...

This tool is for parsing public drug databases such as 'DrugBank' XML database <https://go.drugbank.com/>. The parsed data are then returned in a proper 'R' object called 'dvobject'.

  • Maintainer: Mohammed Ali
  • License: MIT + file LICENSE
  • Last published: 2024-04-20