Helper Functions for Species Delimitation Analysis
A Command-Line Interface for ABGD - Automatic Barcode Gap Discovery
Rename Columns using Darwin Core Standard Terms
A Command-Line Interface for ASAP - Assemble Species by Automatic Part...
Turns bGMYC Results Into a Tibble
Boostrapping DNA sequences
Checks If Two or More Species Delimitation Outputs are (Nearly) Equal
Checks for Differences Between Identifiers in Metadata and DNA Sequenc...
Removes Gaps, Ambiguities and Missing Data from DNA Sequences
Summarise Haplotype Metadata Down to One Row
Confidence Intervals for Species Delimitations Methods
Plot Phylogenetic Trees With Species Delimitation Partitions
Plot Phylogenetic Trees With Species Delimitation Partitions
Customize Delimitation Colors
Estimate a Majority-Vote Consensus
Join Multiple Species Delimitation Methods Outputs
Helper Functions for Species Delimitation Analysis
Remove Sequences of a DNAbin list object
Print Darwin Core Terms, Definitions and Examples as Bullet Lists
Extract Labels and Colors from Species Delimitation Partitions
Get Darwin Core Terms and Definitions
Turns GMYC Results Into a Tibble
Removes Duplicated Sequences from Alignment
Unite Haplotype Summaries with Species Delimitation Outputs
Summarise Haplotypes Down to One Row
Turns Local Minima Results into a Tibble
Compute Agreement Between Alternative Species Delimitation Partitions
A function to report the smallest tip-to-tip distances in a phylogenet...
Generating a Morphological Delimitation Table
A Command-Line Interface for mPTP - multi-rate Poisson Tree Processes
Report Unique Species Partitions
Helpers functions to process, analyse, and visualize the output of single locus species delimitation methods. For full functionality, please install suggested software at <https://legallab.github.io/delimtools/articles/install.html>.
Useful links