deltaccd1.0.2 package

Quantify Rhythmic Gene Co-Expression Relative to a Reference

calcCCD

Calculate clock correlation distance (CCD).

calcDeltaCCD

Calculate delta clock correlation distance.

getRefCor

Retrieve the reference correlation matrix for circadian gene co-expres...

plotHeatmap

Visualize gene co-expression.

plotRefHeatmap

Visualize the reference pattern of gene co-expression.

Download source packageRead PDF manual

Infer progression of circadian rhythms in transcriptome data in which samples are not labeled with time of day and coverage of the circadian cycle may be incomplete. See Shilts et al. (2018) <doi:10.7717/peerj.4327>.

  • Maintainer: Jake Hughey
  • License: GPL-2
  • Last published: 2022-02-11

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