setReplicates function

Generic for the altering setReplicates slot.

Updates the value of the replicates slot for the readsData object supplied. methods

setReplicates(object, repsval)

## S4 method for signature 'readsData'
setReplicates(object, repsval)

Arguments

• object: a readsData object
• repsval: A list of column indices for the samples in each condition.

Returns

The same readsData object with the replicates slot updated.

Methods (by class)

• readsData: Alters the value of the replicates slot of a readsData object.

Examples

RD <- new("readsData", counts = ERCC)
reps <- list(A = c(2,4,5,3,10),B = c(9,7,1,8,6))
RD <- setReplicates(RD, reps)
RD@replicates