depCensoring0.1.8 package

Statistical Methods for Survival Data with Dependent Censoring

boot.nonparTrans

Nonparametric bootstrap approach for a Semiparametric transformation m...

Bvprob

Compute bivariate survival probability

Chronometer

Chronometer object

control.arguments

Prepare initial values within the control arguments

copdist.Archimedean

The distribution function of the Archimedean copula

cophfunc

The h-function of the copula

coppar.to.ktau

Convert the copula parameter the Kendall's tau

Distance

Distance between vectors

estimate.cmprsk

Estimate the competing risks model of Willems et al. (2025).

fitDepCens

Fit Dependent Censoring Models

fitIndepCens

Fit Independent Censoring Models

generator.Archimedean

The generator function of the Archimedean copula

Kernel

Calculate the kernel function

ktau.to.coppar

Convert the Kendall's tau into the copula parameter

Likelihood.Parametric

Calculate the likelihood function for the fully parametric joint distr...

Likelihood.Profile.Kernel

Calculate the profiled likelihood function with kernel smoothing

Likelihood.Profile.Solve

Solve the profiled likelihood function

Likelihood.Semiparametric

Calculate the semiparametric version of profiled likelihood function

loglike.clayton.unconstrained

Log-likelihood function for the Clayton copula.

loglike.frank.unconstrained

Log-likelihood function for the Frank copula.

loglike.gaussian.unconstrained

Log-likelihood function for the Gaussian copula.

loglike.gumbel.unconstrained

Log-likelihood function for the Gumbel copula.

loglike.indep.unconstrained

Log-likelihood function for the independence copula.

LongNPT

Change H to long format

NonParTrans

Fit a semiparametric transformation model for dependent censoring

optimlikelihood

Fit the dependent censoring models.

parafam.d

Obtain the value of the density function

parafam.p

Obtain the value of the distribution function

parafam.trunc

Obtain the adjustment value of truncation

ParamCop

Estimation of a parametric dependent censoring model without covariate...

Parameters.Constraints

Generate constraints of parameters

pi.surv

Estimate the model of Willems et al. (2025).

epCens.Rd

Estimate the model of D'Haen et al. (2025).

ScoreEqn

Score equations of finite parameters

SearchIndicate

Search function

SolveH

Estimate a nonparametric transformation function

SolveHt1

Estimating equation for Ht1

SolveL

Cumulative hazard function of survival time under dependent censoring

SolveLI

Cumulative hazard function of survival time under independent censorin...

SolveScore

Estimate finite parameters based on score equations

summary.depFit

Summary of depCensoringFit object

summary.indepFit

Summary of indepCensoringFit object

SurvDC.GoF

Calculate the goodness-of-fit test statistic

SurvDC

Semiparametric Estimation of the Survival Function under Dependent Cen...

SurvFunc.CG

Estimated survival function based on copula-graphic estimator (Archime...

SurvFunc.KM

Estimated survival function based on Kaplan-Meier estimator

SurvMLE.Likelihood

Likelihood for a given parametric distribution

SurvMLE

Maximum likelihood estimator for a given parametric distribution

TCsim

Function to simulate (Y,Delta) from the copula based model for (T,C).

Several statistical methods for analyzing survival data under various forms of dependent censoring are implemented in the package. In addition to accounting for dependent censoring, it offers tools to adjust for unmeasured confounding factors. The implemented approaches allow users to estimate the dependency between survival time and dependent censoring time, based solely on observed survival data. For more details on the methods, refer to Deresa and Van Keilegom (2021) <doi:10.1093/biomet/asaa095>, Czado and Van Keilegom (2023) <doi:10.1093/biomet/asac067>, Crommen et al. (2024) <doi:10.1007/s11749-023-00903-9>, Deresa and Van Keilegom (2024) <doi:10.1080/01621459.2022.2161387>, Willems et al. (2025) <doi:10.48550/arXiv.2403.11860>, Ding and Van Keilegom (2025) and D'Haen et al. (2025) <doi:10.1007/s10985-025-09647-0>.

  • Maintainer: Negera Wakgari Deresa
  • License: GPL-3
  • Last published: 2025-11-06