snpInRun function

Function to return a vector of T/F for whether a SNP is or not in a RUN

This is a core function. The function to determine whether a SNP is or not in a RUN. The ratio between homozygous/heterozygous windows and total n. of windows is computed here

snpInRun(RunVector, windowSize, threshold)

Arguments

• RunVector: vector of TRUE/FALSE (is a window homozygous/heterozygous?)
• windowSize: size of window (n. of SNP)
• threshold: threshold to call a SNP in a RUN

Returns

vector of TRUE/FALSE (whether a SNP is in a RUN or NOT)