snpInsideRunsCpp function

Function to count number of times a SNP is in a RUN

snpInsideRunsCpp(runsChrom, mapChrom, genotypeFile)

Arguments

• runsChrom: R object (dataframe) with results per chromosome
• mapChrom: R map object with SNP per chromosome
• genotypeFile: genotype (.ped) file location

Returns

dataframe with counts per SNP in runs (per population)