dfped1.1 package

Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies

albAge

Concentration of albumin according to age.

alpha1AGage

Concentration of alpha1-acid glycoprotein according to age.

Cladu

Clearance of the unbound fraction of a specific molecule for the adult...

Clch.Allo

Paediatric clearance according to the allometry adjustment (AA) for a ...

Clch.Linear

Paediatric clearance according to the linear adjustment (LA) for a spe...

Clch.Mat

Paediatric clearance according to the maturation adjustment (MA) for a...

Clchu

Clearance of the unbound fraction of a specific molecule for the paedi...

concAd

Concentration of a specific molecule in plasma for the adult populatio...

concCh

Concentration of a specific molecule in plasma for the paediatric popu...

dfped-package

Extrapolation and Bridging of Adult Information in Early Phase Dose-Fi...

doseChoice

Choice of the next given dose level.

doseRange

Dose-range for the paediatric population according to adult clearance,...

Fch

Paediatric bioavailability according to age.

fuCh

Unbound fraction of the molecule in the plasma for children.

KCYP1A2

Fraction of adult CYP1A2 abundance according to age.

KCYP2B6

Fraction of adult CYP2B6 abundance according to age.

KCYP2C18_19

Fraction of adult CYP2C18/CYP2C19 abundance according to age.

KCYP2C8

Fraction of adult CYP2C8 abundance according to age.

KCYP2C9

Fraction of adult CYP2C9 abundance according to age.

KCYP2D6

Fraction of adult CYP2D6 abundance according to age.

KCYP2E1

Fraction of adult CYP2E1 abundance according to age.

KCYP3A

Fraction of adult CYP3A abundance according to age.

KCYP3A4_5

Fraction of adult CYP3A4/CYP3A5 abundance according to age.

kickoffControl

Control for presence of at least toxicities and efficacies for the goo...

metaPhase

Meta-analysis function of dose-finding studies proposed by Zohar et al...

priorChoice

Decision function for the choice of variance (sigmaHI or sigmaLI) in t...

sigmaEss

The variance of the effective sample size (ESS).

sigmaHI

Compute the informative prior variance for the adaptive prior.

sigmaLI

Compute the least informative prior variance for the adaptive prior.

simu

A simulation of a single dose-finding trials in paediatrics.

simulation

Simulate one or "n" dose-finding trials in paediatrics.

skeleton

Build a working model.

waic

Function for the Watanabe-Akaike information criteria (WAIC)

weightCYPsum

Proportion of the molecule metabolised by the CYPs for a child accordi...

A unified method for designing and analysing dose-finding trials in paediatrics, while bridging information from adults, is proposed in the 'dfped' package. The dose range can be calculated under three extrapolation methods: linear, allometry and maturation adjustment, using pharmacokinetic (PK) data. To do this, it is assumed that target exposures are the same in both populations. The working model and prior distribution parameters of the dose-toxicity and dose-efficacy relationships can be obtained using early phase adult toxicity and efficacy data at several dose levels through 'dfped' package. Priors are used into the dose finding process through a Bayesian model selection or adaptive priors, to facilitate adjusting the amount of prior information to differences between adults and children. This calibrates the model to adjust for misspecification if the adult and paediatric data are very different. User can use his/her own Bayesian model written in Stan code through the 'dfped' package. A template of this model is proposed in the examples of the corresponding R functions in the package. Finally, in this package you can find a simulation function for one trial or for more than one trial. These methods are proposed by Petit et al, (2016) <doi:10.1177/0962280216671348>.

  • Maintainer: Artemis Toumazi
  • License: GPL (>= 3)
  • Last published: 2018-03-27