diveMove1.6.2 package

Dive Analysis and Calibration

austFilter

Filter satellite locations

boutfreqs

Histogram of log-transformed frequencies

boutinit

Fit "broken stick" model to log frequency data for identification of b...

Bouts-class

Class "Bouts" for representing Poisson mixtures for identification of ...

bouts-internal

Utilities for Poisson mixture analyses

boutsBEC

Calculate bout ending criteria from model coefficients

boutsCDF

Estimated cumulative frequency for two- or three-process Poisson mixtu...

boutsMLEll

Log likelihood function of parameters given observed data

boutsNLSll

Generalized log likelihood function taking any number of Poisson proce...

calibrateDepth

Calibrate Depth and Generate a "TDRcalibrate" object

calibrateSpeed

Calibrate and build a "TDRcalibrate" object

createTDR

Read comma-delimited file with "TDR" data

detDive-internal

Detect dives from depth readings

detPhase-internal

Detect phases of activity from depth readings

distSpeed

Calculate distance and speed between locations

diveModel-class

Class "diveModel" for representing a model for identifying dive phases

diveMove-defunct

Defunct functions in package diveMove

diveMove-deprecated

Deprecated functions in diveMove

diveMove-internal

Internal diveMove Functions

diveMove-package

Dive Analysis and Calibration

diveStats

Per-dive statistics

dot-runquantile

Quantile of Moving Window

extractDive

Extract Dives from "TDR" or "TDRcalibrate" Objects

fitMLEbouts

Maximum Likelihood Model of mixtures of 2 or 3 Poisson Processes

fitNLSbouts

Fit mixture of Poisson Processes to Log Frequency data via Non-linear ...

labDive-internal

Internal Functions used for Detection of Dives

labelBouts

Label each vector element or matrix row with bout membership number

plotBouts

Plot fitted Poisson mixture model and data

plotBoutsCDF

Plot empirical and deterministic cumulative frequency distribution Poi...

plotDiveModel

Methods for plotting models of dive phases

plotTDR

Methods for plotting objects of class "TDR" and "TDRcalibrate"

plotZOC

Methods for visually assessing results of ZOC procedure

readLocs

Read comma-delimited file with location data

rmixexp

Generate samples from a mixture of exponential distributions

rqPlot

Plot of quantile regression for speed calibrations

TDR-accessors

Coerce, Extractor, and Replacement methods for class "TDR" objects

TDR-class

Classes "TDR" and "TDRspeed" for representing TDR information

TDRcalibrate-accessors

Methods to Show and Extract Basic Information from "TDRcalibrate" Obje...

TDRcalibrate-class

Class "TDRcalibrate" for dive analysis

timeBudget

Describe the Time Budget of Major Activities from "TDRcalibrate" objec...

Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.

  • Maintainer: Sebastian P. Luque
  • License: GPL-3
  • Last published: 2024-01-23