Entropy Partitioning to Measure Diversity
Fit a distribution
Paracou plot 6
Class phylo_divent
Plot phylo_divent Objects
alpha-shape calculation
Plot Accumulation Objects
Plot Profile Objects
ggplot method to plot wmppp objects
check_divent_args
Faith's Phylogenetic Diversity of a Community
Phylogenetic Diversity of a Community
Number of Species of a Community
Similarity-Based Diversity of a Community
divent
Grassberger's expectation of n^q
Abundance Frequency Count of a Community
Abundances of Communities
Phylogenetic Diversity Accumulation of a Community
Diversity Accumulation of a Community
Spatial Diversity Accumulation of a Community
Spatial Accumulation of Diversity
Sample Coverage of a Community
Generalized Simpson's Diversity
Hill number of a Community
Hurlbert Diversity of a Community
Diversity partition
Allen et al.'s Phylogenetic Entropy of a Community
Generalized Simpson's Entropy
Hurlbert Entropy of a Community
Phylogenetic Entropy of a Community
Rao's Quadratic Entropy of a Community
Shannon's Entropy of a Community
Similarity-Based Entropy of a Community
Simpson's Entropy of a Community
Spatially Explicit Simpson's Entropy
Tsallis Entropy of a Community
Deformed exponential
Functional ordinariness of a community
Functional similarity
Deformed logarithm
Aggregate communities into a metacommunity
Mock data
Plot Profile Objects
Probabilities of Species
Diversity Profile of a Community
Phylogenetic Diversity Profile of a Community
Similarity-Based Diversity Profile of a Community
Random communities
Objects exported from other packages
Log-Series Distribution
Species Distributions
Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>. 'divent' provides functions to estimate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.
Useful links