Piecewise Linear Segmentation by Dynamic Programming
Adds linear regression data to dpsegresults or a table of segment bo...
backtracing dpseg segment break-points
dpseg : linear segmentation by dynamic programming
inefficient dpseg implementation
Estimate a starting value for penalty P.
Visualizes the dpseg segmentation recursion as a movie.
Escherichia coli growth curves.
Plot method for a dpseg segmentation model.
Predict method for dpseg segmentations
Print method for linear segmentation result from dpseg.
Scan over different penalty P values
construct a segment table
Piecewise linear segmentation of ordered data by a dynamic programming algorithm. The algorithm was developed for time series data, e.g. growth curves, and for genome-wide read-count data from next generation sequencing, but is broadly applicable. Generic implementations of dynamic programming routines allow to scan for optimal segmentation parameters and test custom segmentation criteria ("scoring functions").