dynamAedes2.2.9 package

A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes

adci

Summaries of mosquito abundance

dici

Estimate of of mosquito dispersal

dot-a.a_disp.f

Log-Normal probability density of short active dispersal

dot-a.gono_rate.f

Daily rate of gonotrophic cycle

dot-a.ovi_rate.f

Oviposition rate

dot-a.surv_rate.f

Adult female daily mortality rate

dot-beta.fun

Function 1 to start Beta functions: Functions taken from https://githu...

dot-beta.init

Function 3 to start Beta functions: Functions taken from https://githu...

dot-d.surv_rate.f

Diapause eggs daily survival rate

dot-DRC.beta

Function 2 to start Beta functions: Functions taken from https://githu...

dot-e.dia_rate.f

Allocation of diapause eggs

dot-e.hatch_rate.f

Egg hatching rate

dot-e.surv_rate.f

Egg daily survival rate

dot-euc

Euclidean distance

dot-i.ddmort_rate.f

Immature Density-dependent mortality rate

dot-i.emer_rate.f

Immature daily emergence rate

dot-i.surv_rate.f

Immature daily survival rat

dot-meuc

Euclidean distance from a pair of coordinates

dot-returndis

Distance moved by mosquito populations

dynamAedes.m

Life cycle simulation of Aedes mosquitoes

dynamAedesClass-class

S4 class representing the output of dynamAedes.m

icci

Number of invaded cells

max-dynamAedesClass-method

Max method for dynamAedesClass Provides the max number of days with at...

min-dynamAedesClass-method

Min method for dynamAedesClass Provides the min number of days with at...

psi

Proportion of successful introductions

psi_sp

Probability of successful introduction (spatial)

spreader

Temporal downscaling of entomological surveillance observations

summary-dynamAedesClass-method

Summary method for dynamAedesClass Provides a summary of simulations b...

Generalised model for population dynamics of invasive Aedes mosquitoes. Rationale and model structure are described here: Da Re et al. (2021) <doi:10.1016/j.ecoinf.2020.101180> and Da Re et al. (2022) <doi:10.1101/2021.12.21.473628>.

  • Maintainer: Matteo Marcantonio
  • License: GPL (>= 2)
  • Last published: 2024-03-12