easybio1.2.3 package

Visualization Artist for Custom Plots

Extract Unique Elements from a Column with Optional Filtering

Retrieve Available Tissue Classes for a Given Species

Retrieve Available Tissue Types for a Given Species

Verify and Explore Cell Type Annotations

Construct a DGEList Object

Filter Low-Expressed Genes and Normalize DGEList Data

easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analy...

Create a Vector from an Index-to-Label Map

Retrieve Attributes from an R Object

Retrieve Markers for Specific Cells from cellMarker2

Perform Summary Analysis by Group Using Regular Expressions

Perform Summary Analysis by Group Using an column Index

Fit a Linear Model for RNA-seq data using limma

Convert a List with Vector Values to a Long Data.table

Convert a Named List into a Graph Based on Overlap

Annotate Clusters by Matching Markers with the CellMarker2.0 Database

Plot Enrichment for a Specific Pathway in fgsea

Visualization of GSEA Result from fgsea::fgsea()

Plot Distribution of a Marker Across Tissues and Cell Types

Visualization of ORA Test Results

Plot Possible Cell Distribution Based on matchCellMarker2() Results

Visualization of GSEA Rank Statistics

Create a Dot Plot to Visualize Marker Gene Expression

Plot Volcano Plot for Differentially Expressed Genes

Download and Process GEO Data

Prepare TCGA Data for Analysis

Rename Column Names of a Data Frame or Matrix

Rename Row Names of a Data Frame or Matrix

Set a Directory for Saving Files

Split a Matrix into Smaller Sub-matrices by Column or Row

Suggest Best Matches for a String from a Vector of Choices

Custom ggplot2 Theme for Academic Publications

Optimize Resolution and Gene Number Parameters for Cell Type Annotatio...

Map UniProt IDs to Other Identifiers

Perform Operations in a Specified Directory and Return to the Original...