Graphical Modelling and Ordination using Copulas
Fitting Gaussian copula graphical lasso to co-occurrence data
Model based ordination with Gaussian copulas
Fitted values from a stackedsdm object
Plot graph of direct species associations.
Plots an ordination of latent variables and their corresponding coeffi...
Plot residuals of stackedsdm.
Predictions from a stackedsdm object
Print function for cgr object
Print function for cord object
Objects exported from other packages
Calculate residuals from a stackedsdm object
Simulates new data from a given cord object
Stacked species regression models, possibly fitted in parallel
Summary function for cgr object
Summary function for cgr object
Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.