Dissimilarity-Based Functions for Ecological Analysis
Fit new points to an existing NMDS configuration.
Bray-Curtis distance
Two-matrix correlation table
Generate correlated data
Data formatting
Dimension of a distance object
Calculate dissimilarity/distance metrics
Dissimilarity-Based Functions for Ecological Analysis
Distance matrix conversion
Full symmetric matrix
Lower-triangular matrix
Mantel test
Mantel correlogram
Mantel test for groups
Find minimum stress configuration
Multiple Regression on distance Matrices
Non-metric multidimensional scaling
Graph extension of dissimilarities
Principal coordinates analysis
Plot a Mantel correlogram
Plot information about NMDS ordination
Plots fitted vectors onto an ordination diagram
Piecewise multivariate correlogram
Relativize a compositional data matrix.
Residuals of a Mantel correlogram
Rotate a 2D ordination.
Vector fitting
Cross-distance between two datasets.
Cross-Mantel test
Cross-Mantel correlogram
Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community ecological data. The original package description is in Goslee and Urban (2007) <doi:10.18637/jss.v022.i07>, with further statistical detail in Goslee (2010) <doi:10.1007/s11258-009-9641-0>.