ecodive2.2.2 package

Parallel and Memory-Efficient Ecological Diversity Metrics

adiv_functions

Alpha Diversity Metrics

alpha_div

Alpha Diversity Wrapper Function

bdiv_functions

Beta Diversity Metrics

beta_div

Beta Diversity Wrapper Function

documentation

documentation

metrics

Find and Browse Available Metrics

n_cpus

Number of CPU Cores

rarefy

Rarefy OTU counts.

read_tree

Read a newick formatted phylogenetic tree.

Download source packageRead PDF manual

Computes alpha and beta diversity metrics using concurrent 'C' threads. Metrics include 'UniFrac', Faith's phylogenetic diversity, Bray-Curtis dissimilarity, Shannon diversity index, and many others. Also parses newick trees into 'phylo' objects and rarefies feature tables.

  • Maintainer: Daniel P. Smith
  • License: MIT + file LICENSE
  • Last published: 2026-01-16

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