Analysis of Ecological Dynamic Regimes
Define representative trajectories from trajectory features
Metrics of trajectory deviation with respect to a reference trajectory
Dissimilarities between Ecological Dynamic Regimes
ecoregime: Analysis of Ecological Dynamic Regimes
Metrics of Ecological Dynamic Regimes
Plot Ecological Dynamic Regimes
Plot representative trajectories of Ecological Dynamic Regimes
Representative trajectories in Ecological Dynamic Regimes (RETRA-EDR)
Position of a state with respect to a trajectory
Summarize representative trajectories
A toolbox for implementing the Ecological Dynamic Regime framework (Sánchez-Pinillos et al., 2023 <doi:10.1002/ecm.1589>) to characterize and compare groups of ecological trajectories in multidimensional spaces defined by state variables. The package includes the RETRA-EDR algorithm to identify representative trajectories, functions to generate, summarize, and visualize representative trajectories, and several metrics to quantify the distribution and heterogeneity of trajectories in an ecological dynamic regime and quantify the dissimilarity between two or more ecological dynamic regimes. The package also includes a set of functions to assess ecological resilience based on ecological dynamic regimes (Sánchez-Pinillos et al., 2024 <doi:10.1016/j.biocon.2023.110409>).
Useful links