ecotoxicology1.0.1 package

Methods for Ecotoxicology

AdjustAbbott

Calculate corrected efficacy % with Abbott's formula

AdjustHendersonTilton

Calculate corrected efficacy % with Henderson-Tilton's formula

AdjustSchneiderOrelli

Calculate corrected efficacy % with Schneider-Orelli's formula

AdjustSunShepard

Calculate corrected efficacy % with Sun-Shepard's formula

ArcsinToPercentage

Convert Arcsin values to percentages

CalculateLC50

Calculate LC50 from a matrix with 3 columns: concentration, number of ...

CalculateLCn

Calculate LC for N between 0 (LC0) and 100 (LC100)

ecotoxicology-internal

Internal ecotoxicology functions

erfinv

Inverse error function

GenTableIFinney1964

Generate table I from Finney1964 "Transformation of percentages to pro...

GenTableIIFinney1964

Generate table II from Finney1964 "The weighting coefficient and Q/Z"

GenTableIIIFinney1964

Generate table III from Finney1964 "Maximum and minimum working probit...

GenTableIVFinney1964

Generate table IV from Finney1964 "Working probits"

GenTableIXFinney1964

Generate table IX from Finney1964 "Minimum Working Probit, Range, and ...

GenTableVFinney1964

Generate table V from Finney1964 "The Probability, P, the Ordinate, Z,...

GenTableVIFinney1964

Generate table VI from Finney1964 "Distribution of chi^2"

GenTableVIIFinney1964

Generate table VII from Finney1964 "Distribution of t"

GenTableVIIIFinney1964

Generate table VIII from Finney1964 "The Weighting Coefficient in Wadl...

IsMonotonicallyDecreasing

Determine if a series is monotonically decreasing

IsMonotonicallyIncreasing

Determine if a series is monotonically increasing

MakeMonotonicallyDecreasing

Make monotonically decreasing sequence

MakeMonotonicallyIncreasing

Smoothed Mortality Proportion (monotonically increasing sequence)

PercentageToArcsin

Convert percentages to Arcsin values

PercentageToProbit

Convert percentages to Probit values

ProbitApproxStandardErrorOfDosage

Approximate Standard Error of dosage

ProbitChi

Estimate the column for Chi calculation

ProbitEPA

Probit estimation similar to the EPA's Ecological Exposure Research Di...

ProbitFiducialLimits

Probit Fiducial Limits

ProbitFinney

Probit estimation regression with Finney's method

ProbitRegression

Probit regression line

ProbitStandardErrorOfDosage

Standard Error of dosage

ProbitStandardErrorRate

Standard Error of rate of increase of probit value per unit increase i...

ProbitToPercentage

Convert Probit values to percentages

ProbitVALUEg

Probit value "g"

ProbitVarianceDosage

Variance of dosage

ProbitVarianceRate

Variance of rate of increase of probit value per unit increase in x

Probitw

Calculate weighting coefficient from expected probit

ProbitWeightingCoef

Calculate the weighting coefficient

ProbitWorkingP

Calculate working probit

ProbitZ

Calculate the ordinate to the normal distribution corresponding to the...

ProbitZ4dec

Calculate the ordinate to the normal distribution corresponding to the...

ScaleArcher

Archer Scale for assessment of leaf damage

ScaleGauhlStover

Gauhl’s modification of Stover’s severity scoring system

ScaleHorsfallBarratt

Horsfall-Barratt Scale for Measuring Plant Disease

SpearmanKarber

Spearman Karber estimation

TestMix2poisons

Generate table 26 from Finney1964 "The Function for Planning Tests of ...

TSK

Trimmed Spearman-Karber method, as per Hamilton and EPA

WAAPPpestCount

WAAPP Pest Count scoring system

Implementation of the EPA's Ecological Exposure Research Division (EERD) tools (discontinued in 1999) for Probit and Trimmed Spearman-Karber Analysis. Probit and Spearman-Karber methods from Finney's book "Probit analysis a statistical treatment of the sigmoid response curve" with options for most accurate results or identical results to the book. Probit and all the tables from Finney's book (code-generated, not copied) with the generating functions included. Control correction: Abbott, Schneider-Orelli, Henderson-Tilton, Sun-Shepard. Toxicity scales: Horsfall-Barratt, Archer, Gauhl-Stover, Fullerton-Olsen, etc.

  • Maintainer: Jose Gama
  • License: GPL (>= 3)
  • Last published: 2015-10-14