'C++' Implementations of Functional Enrichment Analysis
Class "compareClusterResult" This class represents the comparison resu...
Common parameters for enrichit functions
enrichit: 'C++' Implementations of Functional Enrichment Analysis
Class "enrichResult" This class represents the result of enrichment an...
EXTID2NAME
geneID generic
geneInCategory generic
gsea_gson
Gene Set Enrichment Analysis (GSEA)
Class "gseaResult" This class represents the result of GSEA analysis
Calculate GSEA Running Enrichment Scores
gsfilter
ora-gson
Over-Representation Analysis (ORA)
setReadable
show method
summary method
Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'. Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA). The multilevel GSEA algorithm is derived from the 'fgsea' package. Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.