Entropy Partitioning to Measure Diversity
Abundances of 8 species to run examples.
Functional tree with 8 species.
Grassberger's expectation of n^q
Entropy Partitioning to Measure Diversity
Abundance Frequency Count of a Community
Diversity accumulation.
Entropy of Monte-Carlo simulated communities
Phylogenetic Entropy of a Community
Reduced-bias alpha diversity of a metacommunity
Reduced-bias alpha entropy of a metacommunity
Finds the original value (name of expression) of the argument of a fun...
Exponential of order q
Reduced-bias beta diversity of a metacommunity
Reduced-bias beta entropy of a metacommunity
Phylogenetic Diversity of a Community
Checks the arguments of a function of the package entropart
Diversity or Entropy Profile of a community
Sample coverage of a community
Hill number of a community
Diversity Estimation of a metacommunity
Diversity Partition of a metacommunity
Diversity Profile of a metacommunity
Similarity-based diversity of a community
Reduced-bias gamma diversity of a metacommunity
Reduced-bias gamma entropy of a metacommunity
Generalized Simpson's Entropy and Diversity
Similarity-based entropy of a community
Similarity-based beta entropy of a community
Hurlbert's Index and Explicit Diversity
Manipulation of meta-communities
Generalized Kullback-Leibler divergence
Logarithm of order q
Meta-Community diversity class.
Meta-Community entropy class.
Merge community data
Metacommunity class
Optimal scale parameter to transform a distance matrix into a similari...
Functional distances between pairs of species of Paracou field station...
Functional tree of species of Paracou field station plots 6 and 18, tw...
Paracou field station plots 6 and 18, two 1-ha plots inventoried by th...
Taxonomy (Family - Genus - Species) of Paracou field station plots 6 a...
Phylogenetic Diversity / Functional Diversity of a Community
Apply a Function over a Phylogenetic Tree
Phylogenetic Beta Entropy of a community
Phylogenetic Diversity of a Community
Phylogenetic Entropy of a community
Phylogenetic entropy or diversity.
Preprocessed Trees.
Preprocessing of metacommunity data
Preprocessing of a phylogenetic tree
Fit Distributions to Well-Known Rank Abundance Curves.
Rao Quadratic Entropy of a Community
Random Communities
Objects exported from other packages
Number of species of a community
Shannon entropy of a community
Shannon beta entropy of a community
Simpson entropy of a community
Simpson beta entropy of a community
SimTest class
Species Distributions
Tsallis (HCDT) Entropy of a community
Tsallis beta entropy of a community
Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>. 'entropart' provides functions to calculate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity. Estimation-bias corrections are available.
Useful links