epicontacts1.1.4 package

Handling, Visualisation and Analysis of Epidemiological Contacts

as.igraph.epicontacts

Create igraph object from contact data

codeawesome

Reference codes for fontawesome

colors

Color tools and palettes for epicontacts

get_clusters

Assign cluster IDs to epicontacts data

get_degree

Find node degree for epicontacts objects

get_id

Access unique identifiers in epicontacts objects

get_pairwise

Characterise contacts by comparing case attributes

graph3D

Interactive 3D Force-directed graph from epicontacts object

make_epicontacts

Read linelist and contact data

plot.epicontacts

Plot epicontacts objects

print.epicontacts

Print method for epicontacts objects

print.summary_epicontacts

Print method for summary_epicontacts objects

sub-.epicontacts

Subset epicontacts objects based on case identifiers

subset.epicontacts

Subset an epicontact object by factors

subset_clusters_by_id

Subset epicontacts by case-specified clusters

subset_clusters_by_size

Subset clusters from epicontacts object by cluster size

summary.epicontacts

Summary method for epicontacts objects

thin

Thin data to retain matching linelist / contacts

vis_epicontacts

Plot epicontacts objects using visNetwork

Download source packageRead PDF manual

A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.

  • Maintainer: Finlay Campbell
  • License: GPL (>= 2)
  • Last published: 2024-04-30

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