Predicting Disease Spread from Flow Data
Add/Retrieve location coordinates
Convert to SpatialLinesDataFrame class
epiflows
Travel-related disease cases spreaded to other locations from an infec...
Access flow data
Access population identifiers in epiflows objects
Access flow data
get the number of cases per flow
Get population size for each entry in locations
Access location metadata
Epiflow Global Variables
Visualise epidemic flows using a grid
Create an epiflows object
Map flows of people between locations
Various plots for epiflows objects
Print method from epiflows objects
Subset epiflows objects
Visualise epidemic flows using visNetwork
Provides functions and classes designed to handle and visualise epidemiological flows between locations. Also contains a statistical method for predicting disease spread from flow data initially described in Dorigatti et al. (2017) <doi:10.2807/1560-7917.ES.2017.22.28.30572>. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Useful links