epitools0.5-10.1 package

Epidemiology Tools

ageadjust.direct

Age standardization by direct method, with exact confidence intervals

ageadjust.indirect

Age standardization by indirect method, with exact confidence interval...

as.hour

Convert date-time object into hour units

as.month

Convert dates into months of the year for plotting epidemic curves

as.week

Convert dates object in 'disease week' for plotting epidemic curves

binom.conf.int

Confidence intervals for binomial counts or proportions

colorbrewer

Display and create ColorBrewer palettes

colors.plot

Plots R's 657 named colors for selection

epicurve

Construct an epidemic curve

epidate

Convert dates into multiple legible formats

epitab

Epidemiologic tabulation for a cohort or case-control study

epitable

Create r x c contigency table (exposure levels vs. binary outcome)

expand.table

Expand contingency table into individual-level data set

expected

Expected values in a table

julian2date

Convert a julian date into standard a date format

kapmeier

Implements product-limit (Kaplan-Meier) method

oddsratio

Odds ratio estimation and confidence intervals

or.midp

Odds ratio estimation and confidence intervals using mid-p method

ormidp.test

odds ratio test for independence (p value) for a 2x2 table

pois.conf.int

Confidence intervals for Poisson counts or rates

probratio

Obtain unbiased probability ratios from logistic regression models

rate2by2.test

Comparative tests of independence in rx2 rate tables

rateratio

Rate ratio estimation and confidence intervals

ratetable

Create r x 2 count and person-time table for calculating rates

riskratio

Risk ratio estimation and confidence intervals

tab2by2.test

Comparative tests of independence in rx2 contigency tables

table.margins

Marginal totals of a table

Tools for training and practicing epidemiologists including methods for two-way and multi-way contingency tables.

  • Maintainer: Adam Omidpanah
  • License: GPL (>= 2)
  • Last published: 2020-03-22