epm1.1.3 package

EcoPhyloMapper

addLegend

addLegend

addPhylo

addPhylo

addTraits

addTraits

betadiv_disparity

Map change in morphological disparity

betadiv_phylogenetic

Map phylogenetic turnover in species communities

betadiv_taxonomic

Map turnover in species communities

calcMeanShape

Calculate mean shape per grid cell

coordsFromEpmGrid

Retrieve coordinates from epmGrid

createEPMgrid

Create epmGrid object

customBetaDiv

Custom beta diversity metrics

customGridMetric

Custom grid metrics

dropSpecies

Drop species from epmGrid

DRstat

Calculate the DR statistic

epm-example

Eco Phylo Mapper datasets

epm

EcoPhyloMapper (epm)

epmToPhyloComm

Convert epmGrid to community matrix

expandSpeciesCellList

Expand species list

extractFromEpmGrid

Extract from epmGrid

faithPD

Calculate Faith's Phylogenetic Diversity

generateOccurrenceMatrix

Convert epmGrid to community matrix

getExtentOfList

Get extent of list

getMultiMapRamp

Extract min and max for multiple epmGrids

getSpPartialDisparities

Partial Disparity

gridMetrics

Grid Metrics

identify

Interactively identify species in epmGrid

interactiveExtent

Interactively choose extent

plot

Plot epmGrid

plotDispersionField

Plot dispersion fields

plotSpRange

plot a single species' range

rasterToGrid

Convert raster to sf grid

read.epmGrid

Read a epmGrid object

reduceToCommonTaxa

Subset epmGrid to shared taxa

singleSpCellIndex

Identify single-species cells

spCountIndex

Identify cells that have a certain number of taxa

summarizeEpmGridList

Summarize lists of epmGrid objects

summary

epmGrid summary

tableFromEpmGrid

Data table from epmGrid

write.epmGrid

Save epmGrid object

writeEpmSpatial

Write epmGrid Spatial Object to Disk

Facilitates the aggregation of species' geographic ranges from vector or raster spatial data, and that enables the calculation of various morphological and phylogenetic community metrics across geography. Citation: Title, PO, DL Swiderski and ML Zelditch (2022) <doi:10.1111/2041-210X.13914>.

  • Maintainer: Pascal Title
  • License: GPL (>= 3)
  • Last published: 2024-09-13