Get annotations by article
Retrieve text-mined annotations contained in abstracts and open access full-text articles.
epmc_annotations_by_id(ids = NULL)
Arguments
ids,: character vector with publication identifiers following the structure "source:ext_id", e.g. "MED:28585529"
Returns
returns text-mined annotations in a tidy format with the following variables
- source: Publication data source
- ext_id: Article Identifier
- pmcid: PMCID that locates full-text in Pubmed Central
- prefix: Text snipped found before the annotation
- exact: Annotated entity
- postfix: Text snipped found after the annotation
- name: Targeted entity
- uri: Uniform link dictionary entry for targeted entity
- id: URL to full-text occurence of the annotation
- type: Type of annotation like Chemicals
- section: Article section mentioning the annotation like Methods
- provider: Annotation data provider
- subtype: Sub-data provider
Examples
## Not run:
annotations_by_id("MED:28585529")
# multiple ids
annotations_by_id(c("MED:28585529", "PMC:PMC1664601"))
## End(Not run)