extras0.8.0 package

Helper Functions for Bayesian Analyses

as_list_unnamed

As List

as_list

As List

bern

Bernoulli Distribution

chk_index

Check Index

chk_indices

Check Indices

chk_pars

Check Parameter Names

dev_bern

Bernoulli Deviances

dev_beta_binom

Beta-Binomial Deviances

dev_binom

Binomial Deviances

dev_gamma_pois_zi

Zero-Inflated Gamma-Poisson Deviances

dev_gamma_pois

Gamma-Poisson Deviances

dev_gamma

Gamma Deviances

dev_lnorm

Log-Normal Deviances

dev_neg_binom

Negative Binomial Deviances

dev_norm

Normal Deviances

dev_pois_zi

Zero-Inflated Poisson Deviances

dev_pois

Poisson Deviances

dev_skewnorm

Skew Normal Deviances

dev_student

Student's t Deviances

exp10

Exponential Transformation of Base 10

exp2

Exponential Transformation of Base 2

extras-package

extras: Helper Functions for Bayesian Analyses

fabs

Absolute

fill_all

Fill All Values

fill_na

Fill Missing Values

ilog

Inverse Log Transformation

ilog10

Inverse Log Base 10 Transformation

ilog2

Inverse Log Base 2 Transformation

ilogit

Inverse Logistic Transformation

inv_logit

Inverse Logistic Transformation

inv_odds

Inverse Odds

invlogit

Inverse Logistic Transformation

kurtosis

Kurtosis

log_lik_bern

Bernoulli Log-Likelihood

log_lik_beta_binom

Beta-Binomial Log-Likelihood

log_lik_binom

Binomial Log-Likelihood

log_lik_gamma_pois_zi

Zero-Inflated Gamma-Poisson Log-Likelihood

log_lik_gamma_pois

Gamma-Poisson Log-Likelihood

log_lik_gamma

Gamma Log-Likelihood

log_lik_lnorm

Log-Normal Log-Likelihood

log_lik_neg_binom

Negative Binomial Log-Likelihood

log_lik_norm

Normal Log-Likelihood

log_lik_pois_zi

Zero-Inflated Poisson Log-Likelihood

log_lik_pois

Poisson Log-Likelihood

log_lik_skewnorm

Skew Normal Log-Likelihood

log_lik_student

Student's t Log-Likelihood

log_odds_ratio

Log-Odds Ratio

log_odds_ratio2

Log Odds Ratio2

log_odds-set

Inverse Log Odds Transformation

log_odds

Log Odds

log-set

Log Transformation

log10-set

Log Base 10 Transformation

log2-set

Log Base 2 Transformation

logit-set

Logistic Transformation

logit

Logistic Transformation

lower

Lower Credible Limit

numericise

Numericise (or Numericize)

odds_ratio

Odds Ratio

odds_ratio2

Odds Ratio2

odds-set

Inverse Odds Transformation

odds

Odds

par_pattern

Parameter Pattern

params

Parameter Descriptions

pextreme

Extreme Probability

phi

Phi

pow

Power

proportional_change

Proportional Change

proportional_change2

Proportional Change2

proportional_difference

Proportional Difference

proportional_difference2

Proportional Difference2

pvalue

Bayesian P-Value

pzeros

Proportion of Zeros

ran_bern

Bernoulli Random Samples

ran_beta_binom

Beta-Binomial Random Samples

ran_binom

Binomial Random Samples

ran_gamma_pois_zi

Zero-Inflated Gamma-Poisson Random Samples

ran_gamma_pois

Gamma-Poisson Random Samples

ran_gamma

Gamma Random Samples

ran_lnorm

Log-Normal Random Samples

ran_neg_binom

Negative Binomial Random Samples

ran_norm

Normal Random Samples

ran_pois_zi

Zero-Inflated Poisson Random Samples

ran_pois

Poisson Random Samples

ran_skewnorm

Skew Normal Random Samples

ran_student

Student's t Random Samples

res_bern

Bernoulli Residuals

res_beta_binom

Beta-Binomial Residuals

res_binom

Binomial Residuals

res_gamma_pois_zi

Zero-Inflated Gamma-Poisson Residuals

res_gamma_pois

Gamma-Poisson Residuals

res_gamma

Gamma Residuals

res_lnorm

Log-Normal Residuals

res_neg_binom

Negative Binomial Residuals

res_norm

Normal Residuals

res_pois_zi

Zero-Inflated Poisson Residuals

res_pois

Poisson Residuals

res_skewnorm

Skew Normal Residuals

res_student

Student's t Residuals

sens_beta

Adjust Beta Distribution Parameters for Sensitivity Analyses

sens_exp

Adjust Exponential Distribution Parameters for Sensitivity Analyses

sens_gamma_pois_zi

Adjust Zero-Inflated Gamma-Poisson Distribution Parameters for Sensiti...

sens_gamma_pois

Adjust Gamma-Poisson Distribution Parameters for Sensitivity Analyses

sens_gamma

Adjust Gamma Distribution Parameters for Sensitivity Analyses

sens_lnorm

Adjust Log-Normal Distribution Parameters for Sensitivity Analysis

sens_neg_binom

Adjust Negative Binomial Distribution Parameters for Sensitivity Analy...

sens_norm

Adjust Normal Distribution Parameters for Sensitivity Analyses

sens_pois

Adjust Poisson Distribution Parameters for Sensitivity Analyses

sens_skewnorm

Adjust Skew Normal Distribution Parameters for Sensitivity Analyses

sens_student

Adjust Student's t Distribution Parameters for Sensitivity Analyses

sextreme

Extreme Surprisal

skewness

Skewness

skewnorm

Skew-Normal Distribution

step

Step

svalue

Surprisal Value

upper

Upper Credible Limit

variance

Variance

xtr_mean

Mean

xtr_median

Median

xtr_sd

Standard Deviation

zeros

Zeros

zscore

Z-Score

Functions to 'numericise' 'R' objects (coerce to numeric objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and calculate deviance residuals as well as 'R' translations of some 'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.

  • Maintainer: Nicole Hill
  • License: MIT + file LICENSE
  • Last published: 2025-01-13