tcnReads function

Performs a total count normalization of reads

Given a data table x with count reads, one column for each sample, this function adjust values in such a way they become comparable between samples. User can specify the maximum value for total count reads to be used for each sample.

tcnReads(x, maxVal=0)

Arguments

• x: Data table with count reads, one column for one sample
• maxVal: Target total number reads for each sample. The value 0 (default) means that the median total of samples is used: maxVal = 0

Returns

This function returns a data table of the same size as input - x2: Data table of the same size as x

Author(s)

Doulaye Dembele doulaye@igbmc.fr

References

Dembele D, Analysis of high biological data using their rank values, Stat Methods Med Res, accepted for publication, 2018

Dembele D, manuscript under preparation

Examples

#    data(fdata);