func2vis1.0-3 package

Clean and Visualize Over Expression Results from 'ConsensusPathDB'

Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.

  • Maintainer: Raghvendra Mall
  • License: GPL (>= 3)
  • Last published: 2023-03-16