Fuzzy Forests
Fuzzy forests algorithm
Fuzzy forests algorithm
Fuzzy Forest Object
fuzzyforest: an implementation of the fuzzy forest algorithm in R.
Fits iterative random forest algorithm.
Plots relative importance of modules.
Multinomial Logistic Regression
Predict method for fuzzy_forest object. Obtains predictions from fuzzy...
Print fuzzy_forest object. Prints output from fuzzy forests algorithm.
Set Parameters for Screening Step of Fuzzy Forests
Set Parameters for Selection Step of Fuzzy Forests
Carries out the selection step of fuzzyforest algorithm.
WGCNA based fuzzy forest algorithm
WGCNA based fuzzy forest algorithm
Set Parameters for WGCNA Step of Fuzzy Forests
Fuzzy forests, a new algorithm based on random forests, is designed to reduce the bias seen in random forest feature selection caused by the presence of correlated features. Fuzzy forests uses recursive feature elimination random forests to select features from separate blocks of correlated features where the correlation within each block of features is high and the correlation between blocks of features is low. One final random forest is fit using the surviving features. This package fits random forests using the 'randomForest' package and allows for easy use of 'WGCNA' to split features into distinct blocks. See D. Conn, Ngun, T., C. Ramirez, and G. Li (2019) <doi:10.18637/jss.v091.i09> for further details.