geiger2.0.11 package

Akaike's Information Criterion for MCMC samples (AICM)

determining Akaike weights

phylogenetic ANOVA and MANOVA

estimate net diversification rate

calibrating MECCA

initialize proposal width

ultrametricization of trees from a supplied timetree

prior densities for truncated discrete random variable

prune specified taxa from a phylogenetic tree

disparity-through-time

Model fitting for continuous comparative data

Fit models of continuous trait evolution to comparative data using MCM...

Model fitting for discrete comparative data

NCBI taxonomy

example datasets

deprecated functions in GEIGER

internal geiger functions

internal geiger functions

GEIGER

posterior samples from single or multiple MCMC runs

tailor reversible-jump Markov chain Monte Carlo sampling

running a MECCA analysis

MEDUSA: modeling evolutionary diversification using stepwise AIC

Compares taxa in data and tree

using the Freckleton and Harvey node-height test

Blending information from taxonomies and trees

MEDUSA: modeling evolutionary diversification using stepwise AIC

using posterior predictive MCMC for modeling quantitative trait evolut...

call r8s from geiger

evolutionary VCV matrix

relative cladogenesis test

Rescale object of class "phylo"

Bayesian sampling of shifts in trait evolution: relaxed Brownian motio...

birth-death population simulator

birth-death tree simulator

simulate character evolution

starting values for MECCA

blending information from taxonomies and trees

descendents of a given node in a phylogenetic tree

conversion of MCMC samples between auteur and coda

compare taxa in data and tree