genSEIR0.1.1 package

Predict Epidemic Curves with Generalized SEIR Modeling

checkRates

Check Rates

fit_SEIQRDP

Fit SEIQRDP function

getA

Compute the matrix A

getDataCOVID

Get COVID-19 Data

getKappaFun

Estimate Death Rate

getLambdaFun

Estimate Recovery Rate

kappaFun

Anonymous function approximating the death rate

lambdaFun

Anonymous function approximating the recovery rate

modelFun

Model function

plot_SEIQRDP

Plots for Epidemic Curves

predict_SEIQRDP

Predict cases using generalized SEIR model

RK4

Runge-Kutta 4th Order Method to Solve Differential Equation

SEIQRDP

Simulate generalized SEIR model

SEIQRDP_for_fitting

Fitted Results for SEIQRDP

Download source packageRead PDF manual

Performs generalized Susceptible-Exposed-Infected-Recovered (SEIR) modeling to predict epidemic curves. The method is described in Peng et al. (2020) <doi:10.1101/2020.02.16.20023465>.

  • Maintainer: Selcuk Korkmaz
  • License: GPL (>= 2)
  • Last published: 2021-07-12