Automated Gene Identification for Post-GWAS and QTL Analysis
Identifies Candidate Genes based on identified Quantitative Trati Loci...
Identifies Candidate Genes based on identified Single Nucleotide Ploym...
Identifies Candidate Genes based on identified Single Nucleotide Ploym...
Imports Hapmap genotypic data file
Imports VCF (Variant Call Format) data file
Plot SNP Distribution on Chromosome Map
Plot SNP Distribution Across Chromosomes
Distribution of SNPs Across Chromosomes from VCF
Distribution of SNPs Across Chromosomes
Facilitates the post-Genome Wide Association Studies (GWAS) and Quantitative Trait Loci (QTL) analysis of identifying candidate genes within user-defined search window, based on the identified Single Nucleotide Polymorphisms (SNPs) as given by Mazumder AK (2024) <doi:10.1038/s41598-024-66903-3>. It supports candidate gene analysis for wheat and rice. Just import your GWAS result as explained in the sample_data file and the function does all the manual search and retrieve candidate genes for you, while exporting the results into ready-to-use output.