Population Genetic Data Analysis Using Genepop
Removing files created by Genepop
Exact test on a single contingency table
File conversions
Private allele method
Allele and genotype frequencies
Tests of genic and genotypic differentiation
Fst (or rho_ST) estimation
Gene diversities and Fis (or rho_IS)
Internal genepop Functions
Population genetic analyses using the Genepop software
Programming utilities
Copy an example file from the Genepop package distribution
Call an experimental GUI for Genepop
Tests of Hardy-Weinberg genotypic proportions
Isolation by distance
Tables and exact test for genotypic linkage disequilibrium
Various data manipulation utilities
Estimation of allele frequencies under genotyping failure.
Set random generator seed for Mantel test
Set random generator seed (except for Mantel test)
Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.