Gene Cluster Visualizations
Convert GenBank Features to Data Frame
Align gene clusters
Add Annotations to a GC_chart
Create a GC Chart Visualization
Modify Cluster Settings
Add a Footer to Each Cluster in a GC Chart
Set or Update Cluster Labels for a GC Chart
Update cluster Title of a GC Chart Cluster
Update Color Scheme in Gene Chart
Modify Coordinates in a GC Chart
Modify Gene Characteristics within a Chart
Update Grid Display of a GC Chart Cluster
Add Labels to Each Cluster in a GC Chart
Set Legend for a Gene Chart
Add Links to GC Chart
Normalize Gene Clusters in a Genomic Chart
Update Scale of a GC Chart Cluster
Update Scale Bar of a GC Chart Cluster
Update Sequence Display of a GC Chart Cluster
Add Title to a GC_chart
Set Tooltip for a Gene Chart
Track Mouse Movement in a GC_chart
Modify Transcript Characteristics within a Chart
Convert GenBank to FASTA Format
Shiny bindings for geneviewer
Calculate Intron Positions Based on Exons
Perform Sequence Alignment Using MUMmer
Perform Protein BLAST Analysis Within Specified Clusters
Read BED Files
Read Protein Sequences from FASTA Files
Read Data from GenBank Files
Read GFF Files
Objects exported from other packages
Provides tools for plotting gene clusters and transcripts by importing data from GenBank, FASTA, and GFF files. It performs BLASTP and MUMmer alignments [Altschul et al. (1990) <doi:10.1016/S0022-2836(05)80360-2>; Delcher et al. (1999) <doi:10.1093/nar/27.11.2369>] and displays results on gene arrow maps. Extensive customization options are available, including legends, labels, annotations, scales, colors, tooltips, and more.