Make 'PICRUSt2' Output Analysis and Visualization Easier
Calculate rank metric for GSEA
Compare the Consistency of Statistically Significant Features
Compare GSEA and DAA results
Compare Metagenome Results
Create heatmap visualization of GSEA results
Create network visualization of GSEA results
Integrated analysis with ggpicrust2 including GSEA
This function integrates pathway name/description annotations, ten of ...
Annotate GSEA results with pathway information
Import Differential Abundance Analysis (DAA) results from MicrobiomeAn...
Convert KO abundance in picrust2 export files to KEGG pathway abundanc...
Pathway information annotation
Differential Abundance Analysis for Predicted Functional Pathways
The function pathway_errorbar() is used to visualize the results of fu...
Gene Set Enrichment Analysis for PICRUSt2 output
Create pathway heatmap
Perform Principal Component Analysis (PCA) on functional pathway abund...
Prepare gene sets for GSEA
Run fast GSEA implementation
Safely Extract Elements from a List
Visualize GSEA results
Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
Useful links