Plotting Tool for Brain Atlases
Brain geom
ggseg_atlas class
ggseg: Plot brain segmentations with ggplot
Validate brain atlas
Validate ggseg_atlas
Alter brain atlas position
Read in atlas data from all subjects
Read in raw FreeSurfer stats file
Read in stats table from FreeSurfer
Reposition brain slices
Colour and fill scales from the ggseg atlases
Colour and fill scales from the ggseg atlases
Axis and label scales from the ggseg atlases
ggseg plot theme
Generate palettes from the ggseg atlases
Get info on brain palettes
Extract unique names of brain regions
Scale ggseg plot axes.
Create brain atlas
Create ggseg atlas
Constructor for brain atlas
Join atlas and data
Extract unique labels of brain regions
Contains 'ggplot2' geom for plotting brain atlases using simple features. The largest component of the package is the data for the two built-in atlases. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.