Generalized Linear Latent Variable Models
Corrected Akaike information criterion and number of observations
Analysis Of Deviance for gllvm
Plot covariate coefficients and confidence intervals
Confidence intervals for model parameters
Functions to extract ecological quantities of the latent variables fro...
Extract species covariances due to environmental random effects from g...
Extract loadings
Extract latent variables
Extract prediction errors for latent variables from gllvm object
Extract residual correlations from gllvm object
Extract residual covariance matrix from gllvm object
Generalized Linear Latent Variable Models
Goodness of fit measures for a gllvm
Log-likelihood of gllvm
Microbial community data
Plot latent variables from gllvm model
Plot phylogenetic random effects from gllvm
Plot Diagnostics for an gllvm Object
Predict Method for gllvm Fits
Predict latent variables for gllvm Fits
Plot random slope coefficients
Dunn-Smyth residuals for gllvm model
Standard errors for gllvm model
Simulate data from gllvm fit
Summarizing gllvm model fits
Update and Re-fit a gllvm Model Call
Returns variance-covariance matrix of coefficients in a GLLVM.
Calculate variance partitioning
Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
Useful links