gmGeostats0.11.4 package

Geostatistics for Compositional Analysis

EmpiricalStructuralFunctionSpecification-class

Empirical structural function specification

variogramModelPlot.logratioVariogram

Quick plotting of empirical and theoretical logratio variograms Quick ...

write.GSLib

Write a regionalized data set in GSLIB format

xvErrorMeasures.data.frame

Cross-validation errror measures

xvErrorMeasures.default

Cross-validation errror measures

fit_lmc

Fit an LMC to an empirical variogram

getMask

Get the mask info out of a spatial data object

getStackElement

Set or get the i-th data frame of a data.frame stack

getTellus

Download the Tellus survey data set (NI)

accuracy

Compute accuracy and precision

ana

Flow anamorphosis transform Compute a transformation that gaussianizes...

anaBackward

Backward gaussian anamorphosis backward transformation to multivariate...

anaForward

Forward gaussian anamorphosis forward transformation to multivariate g...

anis_GSLIBpar2A

Produce anisotropy scaling matrix from angle and anisotropy ratios

AnisotropyRangeMatrix

Force a matrix to be anisotropy range matrix,

AnisotropyScaling

Convert to anisotropy scaling matrix

as.AnisotropyRangeMatrix

Force a matrix to be anisotropy range matrix,

as.AnisotropyScaling

Convert to anisotropy scaling matrix

as.array.DataFrameStack

Convert a stacked data frame into an array

as.CompLinModCoReg

Recast a model to the variogram model of package "compositions"

as.directorVector

Express a direction as a director vector

as.function.gmCgram

Convert a gmCgram object to an (evaluable) function

as.gmCgram

Convert theoretical structural functions to gmCgram format

as.gmEVario

Convert empirical structural function to gmEVario format

as.gmSpatialModel

Recast spatial object to gmSpatialModel format

as.gstat

Convert a regionalized data container to gstat

as.gstatVariogram

Represent an empirical variogram in "gstatVariogram" format

as.list.DataFrameStack

Convert a stacked data frame into a list of data.frames

as.LMCAnisCompo

Recast compositional variogram model to format LMCAnisCompo

as.logratioVariogram

Recast empirical variogram to format logratioVariogram

as.logratioVariogramAnisotropy

Convert empirical variogram to "logratioVariogramAnisotropy"

as.variogramModel

Convert an LMC variogram model to gstat format

CholeskyDecomposition

Create a parameter set specifying a LU decomposition simulation algori...

coloredBiplot.genDiag

Colored biplot for gemeralised diagonalisations Colored biplot method ...

constructMask

Constructs a mask for a grid

DataFrameStack.data.frame

Create a data frame stack

dimnames.DataFrameStack

Return the dimnames of a DataFrameStack

DSpars

Create a parameter set specifying a direct sampling algorithm

gmApply

Apply Functions Over Array or DataFrameStack Margins

gmGaussianMethodParameters-class

parameters for Spatial Gaussian methods of any kind

gmGaussianSimulationAlgorithm-class

parameters for Gaussian Simulation methods

gmMPSParameters-class

parameters for Multiple-Point Statistics methods

gmNeighbourhoodSpecification-class

Neighbourhood description

gmSimulationAlgorithm-class

Parameter specification for a spatial simulation algorithm

gmSpatialDataContainer-class

General description of a spatial data container

gmSpatialMethodParameters-class

Parameter specification for any spatial method

gmSpatialModel-class

Conditional spatial model data container

gmTrainingImage-class

MPS training image class

gmUnconditionalSpatialModel-class

General description of a spatial model

gmValidationStrategy-class

Validation strategy description

GridOrNothing-class

Superclass for grid or nothing

gsi.calcCgram

Compute covariance matrix oout of locations

gsi.Cokriging

Cokriging of all sorts, internal function

gsi.CondTurningBands

Internal function, conditional turning bands realisations

gsi.DS

Workhorse function for direct sampling

gsi.EVario2D

Empirical variogram or covariance function in 2D

gsi.EVario3D

Empirical variogram or covariance function in 3D

gsi.gstatCokriging2compo

Reorganisation of cokriged compositions

gsi.orig

extract information about the original data, if available

gsi.produceV

Create a matrix of logcontrasts and name prefix

gsi.TurningBands

Internal function, unconditional turning bands realisations

has.missings.data.frame

Check presence of missings check presence of missings in a data.frame

image.logratioVariogramAnisotropy

Plot variogram maps for anisotropic logratio variograms

image.mask

Image method for mask objects

image_cokriged

Plot an image of gridded data

is.anisotropySpecification

Check for any anisotropy class

is.isotropic

Check for anisotropy of a theoretical variogram

KrigingNeighbourhood

Create a parameter set of local for neighbourhood specification.

LeaveOneOut

Specify the leave-one-out strategy for validation of a spatial model

length.gmCgram

Length, and number of columns or rows

LMCAnisCompo

Create a anisotropic model for regionalized compositions

logratioVariogram-acomp-method

Logratio variogram of a compositional data

logratioVariogram

Empirical logratio variogram calculation

Maf.data.frame

Generalised diagonalisations Calculate several generalized diagonalisa...

make.gmCompositionalGaussianSpatialModel

Construct a Gaussian gmSpatialModel for regionalized compositions

make.gmCompositionalMPSSpatialModel

Construct a Multi-Point gmSpatialModel for regionalized compositions

make.gmMultivariateGaussianSpatialModel

Construct a Gaussian gmSpatialModel for regionalized multivariate data

mean.accuracy

Mean accuracy

mean.spatialDecorrelationMeasure

Average measures of spatial decorrelation

ModelStructuralFunctionSpecification-class

Structural function model specification

ndirections

Number of directions of an empirical variogram

NfoldCrossValidation

Specify a strategy for validation of a spatial model

noSpatCorr.test

Test for lack of spatial correlation

pairsmap

Multiple maps Matrix of maps showing different combinations of compone...

plot.accuracy

Plot method for accuracy curves

plot.gmCgram

Draw cuves for covariance/variogram models

plot.gmEVario

Plot empirical variograms

plot.logratioVariogramAnisotropy

Plot variogram lines of empirical directional logratio variograms

plot.swarmPlot

Plotting method for swarmPlot objects

plus-.gmCgram

Combination of gmCgram variogram structures

precision

Precision calculations

predict.genDiag

Predict method for generalised diagonalisation objects

predict.LMCAnisCompo

Compute model variogram valuesEvaluate the variogram model provided at...

predict_gmSpatialModel

Predict method for objects of class 'gmSpatialModel'

print.mask

Print method for mask objects

pwlrmap

Compositional maps, pairwise logratios Matrix of maps showing differen...

SequentialSimulation

Create a parameter set specifying a gaussian sequential simulation alg...

setCgram

Generate D-variate variogram models

setGridOrder

Set or get the ordering of a grid

setMask

Set a mask on an object

sortDataInGrid

Reorder data in a grid

spatialDecorrelation

Compute diagonalisation measures

spatialGridAcomp

Construct a regionalized composition / reorder compositional simulatio...

spatialGridRmult

Construct a regionalized multivariate data

spectralcolors

Spectral colors palette based on the RColorBrewer::brewer.pal(11,"Spec...

sphTrans

Spherifying transform Compute a transformation that spherifies a certa...

stackDim-Spatial-method

Get name/index of the stacking dimension of a Spatial object

stackDim

Get/set name/index of (non)stacking dimensions

sub-.DataFrameStack

Extract rows of a DataFrameStack

sub-.gmCgram

Subsetting of gmCgram variogram structures

sub-.logratioVariogramAnisotropy

Subsetting of logratioVariogram objects

sub-sub-.gmCgram

Subsetting of gmCgram variogram structures

swarmPlot

Plot a swarm of calculated output through a DataFrameStack

swath

Swath plots

TurningBands

Create a parameter set specifying a turning bands simulation algorithm

unmask.data.frame

Unmask a masked object

validate

Validate a spatial model

variogram_gmSpatialModel

Variogram method for gmSpatialModel objects

variogramModelPlot.gmEVario

Quick plotting of empirical and theoretical variograms Quick and dirty...

variogramModelPlot.gstatVariogram

Quick plotting of empirical and theoretical variograms Quick and dirty...

Support for geostatistical analysis of multivariate data, in particular data with restrictions, e.g. positive amounts, compositions, distributional data, microstructural data, etc. It includes descriptive analysis and modelling for such data, both from a two-point Gaussian perspective and multipoint perspective. The methods mainly follow Tolosana-Delgado, Mueller and van den Boogaart (2018) <doi:10.1007/s11004-018-9769-3>.