hagis3.1.12 package

Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

autoplot.hagis.complexities

Plot hagis Complexities Objects

autoplot.hagis.gene.summary

Plot hagis Summary Objects

calculate_complexities

Calculate Distribution of Complexities by Sample

calculate_diversities

Calculate Diversities Indices

create_binary_matrix

Create Binary Data Matrix From Pathotype Data

diversities_table

Custom Print for hagis Diversities Tables

hagis-package

hagis: Analysis of Plant Pathogen Pathotype Complexities, Distribution...

individual_pathotypes

Prints Individual Pathotypes for Each Sample

reexports

Objects exported from other packages

summarize_gene

Calculate and Summarize Distribution of Susceptibilities by Gene

Download source packageRead PDF manual

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

  • Maintainer: Adam H. Sparks
  • License: MIT + file LICENSE
  • Last published: 2024-05-16

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