calc_trans_mat_s7 function

Calculate the transition matrix for 7-state joint HMM

calc_trans_mat_s7(t, p_s, w, states_cn, states_phase)

Arguments

• t: numeric; CNV state transition probability
• p_s: numeric; phase switch probability
• w: numeric; relative abundance of states
• states_cn: character; CNV states
• states_phase: character; haplotype phase states

Returns

array; transition matrix