get_trans_probs_s15 function

Helper function to calculate transition porbabilities for 15-state joint HMM cn/phase are sclars, only p_s is vectorized

get_trans_probs_s15(t, p_s, w, cn_from, phase_from, cn_to, phase_to)

Arguments

• t: numeric; CNV state transition probability
• p_s: numeric; phase switch probability
• w: numeric; relative abundance of states
• cn_from: character; originating CNV state
• phase_from: character; originating haplotype phase state
• cn_to: character; destination CNV state
• phase_to: character; destination haplotype phase state

Returns

numeric; transition probability