Haplotype Data Simulation
Haplotype object creator
Haplotype frequencies
Estimates allele frequencies
Checks that a covariance matrix is positive definite
Correlations to D' coefficients conversion
Correlation to covariance conversion
Covariance to correlation conversion
Diversity score
Haplotype data simulator
LD plot
Makes a matrix positive definite
Merges two LD matrices
Mean Square Error
Scales a matrix
Package for haplotype-based genotype simulations. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set.