Hierarchical Methods for Differential Equations
Differential equation for affine growth single individual model
Assign data to template for chosen model
Differential equation for Canham growth single and multi- individual m...
Differential equation for constant growth single and multi- individual...
Extract samples and return measurement, individual, and population-lev...
Calculate Rhat statistics for a hmde_fit object
Function to select DE given model name
Returns names of available models.
Show parameter list for hmde supported model
Select data configuration template for hmde supported model
Plot pieces of chosen differential equation model for each individual....
Plot estimated and observed values over time for a chosen number of in...
Plot histogram of R_hat values for hmde_fit object.
Run chosen pre-built model in Stan
Differential equation for von Bertalanffy growth single and multi- ind...
The 'hmde' package.
Plot function for hmde_model_template object
Print function for hmde_model_template object
Summary function for hmde_model_template object
Wrapper for 'Stan' that offers a number of in-built models to implement a hierarchical Bayesian longitudinal model for repeat observation data. Model choice selects the differential equation that is fit to the observations. Single and multi-individual models are available. O'Brien et al. (2024) <doi:10.1111/2041-210X.14463>.