Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
Calculate Genotypic Distances
Calculate Minor Allele Frequency (MAF)
Image Plot of Blocking Structure
Impute of Low Density SNP Marker to High Density (Paternal Strand)
Example Map File for Genetic Data
Opposing Homozygote Detection
Matrix of Opposing Homozygotes
Read and Check the Genotype File
Recombination Number
Recombination Plot
Crossover Detection
Chromosome Splitter
All-in-one Phasing
Block Partitioning
Simulate Half-Sibling Genotypes
Haplotype Blocks of Phased Data
Heatmap of Half-sibs
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Ev...
Half-sib Family Splitter
Opposing Homozygotes Plot
Parallel Analysis of Data
Example Pedigree Data Set
Fix Pedigree Errors
Half-Sib Family Phasing
Probability Matrix
Parent Offspring Group Constructor
Reconstruct Pedigree Based on Matrix of Opposing Homozygotes
Sire Imputation and Phasing
Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.