top.markers function

Choose top marker genes

This function takes the marker genes info if chooses marker gene names for plots.

top.markers(
  x = NULL,
  topde = 10,
  min.base.mean = 0.2,
  filt.ambig = TRUE,
  cluster = 0
)

Arguments

• x: An object of class iCellR.
• topde: Number of top differentially expressed genes to be choosen from each cluster, default = 10.
• min.base.mean: Minimum base mean of the genes to be chosen, default = 0.5.
• filt.ambig: Filter markers that are seen for more than one cluster, default = TRUE.
• cluster: Choose a cluster to find markers for. If 0, it would find markers for all clusters, , default = 0.

Returns

A set of gene names