Toolkits to Develop Individual-Based Models in Infectious Disease
Calculate cumulative probabilities for state transitions.
Miscellaneous functions to support the ibmcraftr packare are here.
Run state_trans function over a given number of timesteps.
Make state transitions.
Make state transitions using Rcpp.
Create a synthetic population having several states.
It provides a generic set of tools for initializing a synthetic population with each individual in specific disease states, and making transitions between those disease states according to the rates calculated on each timestep. The new version 1.0.0 has C++ code integration to make the functions run faster. It has also a higher level function to actually run the transitions for the number of timesteps that users specify. Additional functions will follow for changing attributes on demographic, health belief and movement.